The Millennium Extension to Arbutus would be about 5 kms of tunnel. The Canada Line was about 3 kms of bored tunnel. This has quite a large impact on whether or not they go with a single or dual bore.
Likely the reason they went with a single TBM and 2 passes on the Canada Line, is because its only 6 kms total of bored tunneling (2 passes), where as the entire line is 19 kms long, so even if they were only getting 40 metres per week average (including launch) they would still finish the tunnel (2 passes) in under 3 years and not affect the overall schedule. The Broadway Line is nearly entirely tunnel, so it therefore is critical path, so much more important that they finish it as quick as possible.
Once you are talking about 5 kms of skytrain (10 kms total bore), you would need to be getting average 60 - 70 metres per week average (including 2 launches) to finish the tunnel in 3 years, so if you run into issues and only achieve 40 metres per week, you end up with the tunnel taking close to 5 years to complete the 2 passes. Plus this adds the need to launch the TBM twice which brings down the average overall.
Where as if you go with a single bore large diameter tunnel on Broadway, you can finish the tunnel in 3 years with just 35 to 40 metres per week average, and the actual TBM rate can actually be much slower since you only need to launch it once.
They are somewhat lucky that they went with the single bore on the Evergreen Line, because they likely would have ran into most of these issues on the first pass, and would be even further behind as they would have had to do a whole other launch and pass. (granted they likely would have had less issues on the 2nd pass)
My bet would be them going with a single bore large diameter tunnel for Broadway, I think a stacked configuration would be cool, especially if they were able to have platforms on both sides of both tracks, but I think that is unlikely, it will probably end up being similar to the Evergreen Line Tunnel.
As an aside, came across this page that talks about Sydney's Rail line which has 15 kms of dual bored tunnel where they are planning to use 4 TBMs at the same time, so each would roughly travel 7.5 kms. Oddly enough, some are calling it "Skytrain" because ~4 kms is elevated.
http://www.tunneltalk.com/Australia-Skytrain-Apr12-Four-TBMs-for-Sydney-North-West-Rail-Link.php